Package: sharpshootR 2.5

Dylan Beaudette

sharpshootR: A Soil Survey Toolkit

A collection of data processing, visualization, and export functions to support soil survey operations. Many of the functions build on the `SoilProfileCollection` S4 class provided by the aqp package, extending baseline visualization to more elaborate depictions in the context of spatial and taxonomic data. While this package is primarily developed by and for the USDA-NRCS, in support of the National Cooperative Soil Survey, the authors strive for generalization sufficient to support any soil survey operation. Many of the included functions are used by the SoilWeb suite of websites and movile applications. These functions are provided here, with additional documentation, to enable others to replicate high quality versions of these figures for their own purposes.

Authors:Dylan Beaudette [cre, aut], Jay Skovlin [aut], Stephen Roecker [aut], Andrew Brown [aut], USDA-NRCS Soil Survey Staff [ctb]

sharpshootR_2.5.tar.gz
sharpshootR_2.5.zip(r-4.7)sharpshootR_2.5.zip(r-4.6)sharpshootR_2.5.zip(r-4.5)
sharpshootR_2.5.tgz(r-4.6-any)sharpshootR_2.5.tgz(r-4.5-any)
sharpshootR_2.5.tar.gz(r-4.7-any)sharpshootR_2.5.tar.gz(r-4.6-any)
sharpshootR_2.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
sharpshootR/json (API)

# Install 'sharpshootR' in R:

install.packages('sharpshootR', repos = c('https://ncss-tech.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ncss-tech/sharpshootr/issues

Datasets:

amador - SSURGO Data Associated with the Amador Soil Series
CDEC.snow.courses - CDEC Snow Course List
HHM - Highland Meadows
OSDexamples - Example output from soilDB::fetchOSD
plssMeridians - LL2PLSS
table5.2 - Table 5.2 from Hole and Campbell, 1985.

On CRAN:

8.25 score 20 stars 325 scripts 485 downloads 66 exports 36 dependencies

Last updated from:811de94c35. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	207
source / vignettes	OK	258
linux-release-x86_64	OK	182
macos-release-arm64	OK	113
macos-oldrel-arm64	OK	155
windows-devel	OK	408
windows-release	OK	394
windows-oldrel	OK	331
wasm-release	OK	163

Exports:aspect.plot CDEC_StationInfo CDECquery CDECsnowQuery colorMixtureVenn component.adj.matrix constantDensitySampling DAF.B DAF.C DAF.D DAF.G dailyWB dailyWB_SSURGO diagnosticPropertyPlot diagnosticPropertyPlot2 dist.along.grad dueling.dendrograms ESS_by_Moran_I estimateSoilMoistureState FFD FFDplot formatPLSS generateLineHash HenryTimeLine huePositionPlot hydOrder isMineralSoilMaterial iterateHydOrder joinAdjacency LL2PLSS moistureStateProportions moistureStateStats moistureStateThreshold monthlyWB monthlyWB_summary Moran_I_ByRaster multinominal2logical PCP_plot percentileDemo plotAvailWater plotDAF plotGeomorphCrossSection plotSoilRelationChordGraph plotSoilRelationGraph plotTransect plotWB plotWB_lines PLSS2LL polygonAdjacency prepare_SSURGO_hydro_data prepareDailyClimateData reconcileOSDGeomorph sample.by.poly sampleRasterStackByMU samplingStability simpleWB site_photos_kml SoilTaxonomyDendrogram vizAnnualClimate vizFlatsPosition vizGeomorphicComponent vizGeomorphons vizHillslopePosition vizMountainPosition vizSurfaceShape vizTerracePosition

Dependencies:ape aqp boot circular class cli cluster colorspace curl data.table DBI digest e1071 farver glue jsonlite labeling lattice lifecycle magrittr MASS mvtnorm nlme plyr proxy R6 RColorBrewer Rcpp reshape2 rlang scales soilDB stringi stringr vctrs viridisLite

An Overview of the sharpshootR Package

Rendered fromsharpshootR-overview.Rmdusingknitr::rmarkdown

Last update: 2024-04-08
Started: 2023-12-29

Help page	Topics
A collection of functions to support soil survey	sharpshootR-package sharpshootR
SSURGO Data Associated with the Amador Soil Series	amador
Plot Aspect Data	aspect.plot
CDEC Sensor Details (by Station)	CDEC_StationInfo
CDEC Snow Course List	CDEC.snow.courses
Easy Access to the CDEC API	CDECquery
Get snow survey data (California only) from the CDEC website.	CDECsnowQuery
Create a Venn Diagram of Simulated Color Mixtures	colorMixtureVenn
Create an adjacency matrix from a data.frame of component data	component.adj.matrix
Sample Polygons at a Fixed Density	constantDensitySampling
Simple Daily Water Balance	dailyWB
Perform daily water balance modeling using SSURGO and DAYMET	dailyWB_SSURGO
Diagnostic Property Plot (base graphics)	diagnosticPropertyPlot
Diagnostic Property Plot (lattice)	diagnosticPropertyPlot2
Compute Euclidean distance along a gradient.	dist.along.grad
Dueling Dendrograms	dueling.dendrograms
Estimate Effective Sample Size	ESS_by_Moran_I
A very simple estimation of soil moisture state based on volumetric water content	estimateSoilMoistureState
Frost-Free Day Evaluation	FFD
Plot output from FFD()	FFDplot
Format Public Land Survey System (PLSS) Components	formatPLSS
Generate a unique ID for line segments	generateLineHash
Sensor Data Timeline from Henry Mount Soil and Water DB	HenryTimeLine
Highland Meadows	HHM
Hue Position Chart	huePositionPlot
Hydrologic Ordering of a Geomorphic Proportion Matrix	hydOrder
Mineral Soil Material Criteria from 12th Ed. of KST	isMineralSoilMaterial
Iteratively Attempt Hydrologic Ordering of Geomorphic Proportion Matrix	iterateHydOrder
Join Document Adjacency	joinAdjacency
LL2PLSS	LL2PLSS plssMeridians
Compute moisture state proportions	moistureStateProportions
Statistics on Soil Moisture State	moistureStateStats
Apply a threshold to soil moisture states	moistureStateThreshold
Monthly Water Balances	monthlyWB
Water Balance Summaries	monthlyWB_summary
Compute Moran's I for a raster sampled from a mapunit extent	Moran_I_ByRaster
Convert Multinominal to Logical Matrix	multinominal2logical
Example output from soilDB::fetchOSD()	OSDexamples
Percentiles of Cumulative Precipitation	PCP_plot
Demonstration of Percentiles vs. Mean / SD	percentileDemo
Visual Demonstration of Available Soil Water	plotAvailWater
Present a 'SoilProfileCollection' aligned to a geomorphic summary as cross-section.	plotGeomorphCrossSection
Visualize Soil Relationships via Chord Diagram	plotSoilRelationChordGraph
Plot a component relation graph	plotSoilRelationGraph
Arrange Profiles along a Transect	plotTransect
Visualize Monthly Water Balance	plotWB
Visualization of a monthly water balance using lines and areas	plotWB_lines
Lookup Geographic Coordinates for Public Land Survey System Descriptions	PLSS2LL
Summarize Spatial Adjacency of Polygon Fabric	polygonAdjacency
Get and prepare basic soil hydraulic parameters from SSURGO via SDA	prepare_SSURGO_hydro_data
Prepare daily climate data (DAYMET) for a single point	prepareDailyClimateData
Reconcile IDs between a SPC and associated geomorphic proportion table	reconcileOSDGeomorph
Sample a Single Polygon at a Target Density	sample.by.poly
Sample a Raster Stack	sampleRasterStackByMU
Estimate Sampling Stability	samplingStability
Simple interface to the hydromad "leaky bucket" soil moisture model	simpleWB
site_photos_kml	site_photos_kml
Soil Taxonomy Dendrogram	SoilTaxonomyDendrogram
Table 5.2 from Hole and Campbell, 1985.	table5.2
Annual Climate Summaries for Soil Series Data	vizAnnualClimate
Visual Summary of Flat Landform Positions	vizFlatsPosition
Visual Summary of Hill Landform Positions	vizGeomorphicComponent
Visual Summary of Landform Classification by Geomorphon	vizGeomorphons
Visual Summary of Hillslope Position	vizHillslopePosition
Visual Summary of Mountain Slope Positions	vizMountainPosition
Visual Summary of Surface Shape	vizSurfaceShape
Visual Summary of Terraced Landform Positions	vizTerracePosition

Package: sharpshootR 2.5

sharpshootR: A Soil Survey Toolkit

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