Package: sharpshootR 2.3.1

Dylan Beaudette

sharpshootR: A Soil Survey Toolkit

Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey.

Authors:Dylan Beaudette [cre, aut], Jay Skovlin [aut], Stephen Roecker [aut], Andrew Brown [aut], USDA-NRCS Soil Survey Staff [ctb]

sharpshootR_2.3.1.tar.gz
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sharpshootR.pdf |sharpshootR.html✨
sharpshootR/json (API)
NEWS

# Install 'sharpshootR' in R:

install.packages('sharpshootR', repos = c('https://ncss-tech.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ncss-tech/sharpshootr/issues

Datasets:

CDEC.snow.courses - CDEC Snow Course List
HHM - Highland Meadows
OSDexamples - Example output from soilDB::fetchOSD
amador - SSURGO Data Associated with the Amador Soil Series
plssMeridians - LL2PLSS
table5.2 - Table 5.2 from Hole and Campbell, 1985.

On CRAN:

67 exports 17 stars 2.70 score 37 dependencies 374 scripts 822 downloads

Last updated 2 months agofrom:7d37ff1a6a. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 11 2024
R-4.5-win	OK	Aug 11 2024
R-4.5-linux	OK	Aug 11 2024
R-4.4-win	OK	Aug 11 2024
R-4.4-mac	OK	Aug 11 2024
R-4.3-win	OK	Aug 11 2024
R-4.3-mac	OK	Aug 11 2024

Exports:aggregateColorPlot aspect.plot CDEC_StationInfo CDECquery CDECsnowQuery colorMixtureVenn component.adj.matrix constantDensitySampling dailyWB dailyWB_SSURGO diagnosticPropertyPlot diagnosticPropertyPlot2 dist.along.grad dueling.dendrograms ESS_by_Moran_I estimateSoilMoistureState FFD FFDplot formatPLSS generateLineHash geomPosHillProbability geomPosMountainProbability HenryTimeLine hillslope.probability hillslopeProbability huePositionPlot hydOrder isMineralSoilMaterial iterateHydOrder joinAdjacency LL2PLSS moistureStateProportions moistureStateStats moistureStateThreshold monthlyWB monthlyWB_summary Moran_I_ByRaster multinominal2logical PCP_plot percentileDemo plotAvailWater plotGeomorphCrossSection plotProfileDendrogram plotSoilRelationChordGraph plotSoilRelationGraph plotTransect plotWB plotWB_lines PLSS2LL polygonAdjacency prepare_SSURGO_hydro_data prepareDailyClimateData reconcileOSDGeomorph sample.by.poly sampleRasterStackByMU samplingStability simpleWB site_photos_kml SoilTaxonomyDendrogram surfaceShapeProbability vizAnnualClimate vizFlatsPosition vizGeomorphicComponent vizHillslopePosition vizMountainPosition vizSurfaceShape vizTerracePosition

Dependencies:ape aqp boot circular class cli cluster colorspace curl data.table DBI digest e1071 farver glue labeling lattice lifecycle magrittr MASS munsell mvtnorm nlme plyr proxy R6 RColorBrewer Rcpp reshape2 rlang scales soilDB sp stringi stringr vctrs viridisLite

An Overview of the sharpshootR Package

Rendered fromsharpshootR-overview.Rmdusingknitr::rmarkdownon Aug 11 2024.

Last update: 2024-04-08
Started: 2023-12-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A collection of functions to support soil survey	sharpshootR-package sharpshootR
Plot aggregate soil color data	aggregateColorPlot
SSURGO Data Associated with the Amador Soil Series	amador
Plot Aspect Data	aspect.plot
CDEC Sensor Details (by Station)	CDEC_StationInfo
CDEC Snow Course List	CDEC.snow.courses
Easy Access to the CDEC API	CDECquery
Get snow survey data (California only) from the CDEC website.	CDECsnowQuery
Create a Venn Diagram of Simulated Color Mixtures	colorMixtureVenn
Create an adjacency matrix from a data.frame of component data	component.adj.matrix
Constant Density Sampling	constantDensitySampling
Simple Daily Water Balance	dailyWB
Perform daily water balance modeling using SSURGO and DAYMET	dailyWB_SSURGO
Diagnostic Property Plot (base graphics)	diagnosticPropertyPlot
Diagnostic Property Plot (lattice)	diagnosticPropertyPlot2
Compute Euclidean distance along a gradient.	dist.along.grad
Dueling Dendrograms	dueling.dendrograms
Estimate Effective Sample Size	ESS_by_Moran_I
A very simple estimation of soil moisture state based on volumetric water content	estimateSoilMoistureState
Frost-Free Day Evaluation	FFD
Plot output from FFD()	FFDplot
formatPLSS	formatPLSS
Generate a unique ID for line segments	generateLineHash
Geomorphic Position Probability via SDA	geomPosHillProbability geomPosMountainProbability hillslope.probability hillslopeProbability surfaceShapeProbability
Sensor Data Timeline from Henry Mount Soil and Water DB	HenryTimeLine
Highland Meadows	HHM
Hue Position Chart	huePositionPlot
Hydrologic Ordering of a Geomorphic Proportion Matrix	hydOrder
Mineral Soil Material Criteria from 12th Ed. of KST	isMineralSoilMaterial
Iteratively Attempt Hydrologic Ordering of Geomorphic Proportion Matrix	iterateHydOrder
Join Document Adjacency	joinAdjacency
LL2PLSS	LL2PLSS plssMeridians
Compute moisture state proportions	moistureStateProportions
Statistics on Soil Moisture State	moistureStateStats
Apply a threshold to soil moisture states	moistureStateThreshold
Monthly Water Balances	monthlyWB
Water Balance Summaries	monthlyWB_summary
Compute Moran's I for a raster sampled from a mapunit extent	Moran_I_ByRaster
Convert Multinominal to Logical Matrix	multinominal2logical
Example output from soilDB::fetchOSD()	OSDexamples
Percentiles of Cumulative Precipitation	PCP_plot
Demonstration of Percentiles vs. Mean / SD	percentileDemo
Visual Demonstration of Available Soil Water	plotAvailWater
Present a 'SoilProfileCollection' aligned to a geomorphic summary as cross-section.	plotGeomorphCrossSection
Plot soil profiles below a dendrogram	plotProfileDendrogram
Visualize Soil Relationships via Chord Diagram	plotSoilRelationChordGraph
Plot a component relation graph	plotSoilRelationGraph
Arrange Profiles along a Transect	plotTransect
Visualize Monthly Water Balance	plotWB
Line / Area Visualization for Monthly Water Balance	plotWB_lines
PLSS2LL	PLSS2LL
Summarize Spatial Adjacency of Polygon Fabric	polygonAdjacency
Get and prepare basic soil hydraulic parameters from SSURGO via SDA	prepare_SSURGO_hydro_data
Prepare daily climate data (DAYMET) for a single point	prepareDailyClimateData
Reconcile IDs between a SPC and associated geomorphic proportion table	reconcileOSDGeomorph
Sample a Polygon at Fixed Density	sample.by.poly
Sample a Raster Stack	sampleRasterStackByMU
Estimate Sampling Stability	samplingStability
Simple interface to the hydromad "leaky bucket" soil moisture model	simpleWB
site_photos_kml	site_photos_kml
Soil Taxonomy Dendrogram	SoilTaxonomyDendrogram
Table 5.2 from Hole and Campbell, 1985.	table5.2
Annual Climate Summaries for Soil Series Data	vizAnnualClimate
Visual Summary of Flat Landform Positions	vizFlatsPosition
Visual Summary of Hill Landform Positions	vizGeomorphicComponent
Visual Summary of Hillslope Position	vizHillslopePosition
Visual Summary of Mountain Slope Positions	vizMountainPosition
Visual Summary of Surface Shape	vizSurfaceShape
Visual Summary of Terraced Landform Positions	vizTerracePosition